College of Agricultural Sciences

J. Kumar Tiwari, Mandadi, N., Sridhar, J., Mandal, V., Ghosh, A., Kardile, H. B., Naga, K. C., Shah, M. Abas, Rawat, S., Venkateswarlu, V., Malik, K., Bhatnagar, A., Chakrabarti, S. K., Kumar, M., Rao, A. R., and Rai, A., “Draft genome sequencing of the foxglove aphid (Aulacorthum solani Kaltenbach), a vector of potato viruses, provides insights on virulence genes”, Journal of Asia-Pacific Entomology, vol. 24, pp. 93-102, 2021.

S. Naithani, Gupta, P., Preece, J., Garg, P., Fraser, V., Padgitt-Cobb, L. K., Martin, M., Vining, K., and Jaiswal, P., “Involving community in genes and pathway curation.”, Database : the journal of biological databases and curation, vol. 2019, 2019.

A. C Quandt, Di, Y., Elser, J., Jaiswal, P., and Spatafora, J. W., “Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.”, G3 (Bethesda, Md.), vol. 6, pp. 731-41, 2016.

V. V. Peremyslov, Mockler, T. C., Filichkin, S. A., Fox, S. E., Jaiswal, P., Makarova, K. S., Koonin, E. V., and Dolja, V. V., “Expression, splicing, and evolution of the myosin gene family in plants.”, Plant physiology, vol. 155, pp. 1191-204, 2011.

V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. Carlos, Celton, J. - M., D Rees, J. G., Williams, K. P., Holt, S. H., Rojas, J. Jairo Ruiz, Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. Lopez, Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., “The genome of woodland strawberry(Fragaria vesca).”, Nature genetics, vol. 43, pp. 109-16, 2011.

K. Youens-Clark, Buckler, E., Casstevens, T., Chen, C., Declerck, G., Derwent, P., Dharmawardhana, P., Jaiswal, P., Kersey, P., Karthikeyan, A. S., Lu, J., McCouch, S. R., Ren, L., Spooner, W., Stein, J. C., Thomason, J., Wei, S., and Ware, D., “Gramene database in 2010: updates and extensions.”, Nucleic acids research, vol. 39, pp. D1085-94, 2011.

A. K. G. Kadegowda, Bionaz, M., Thering, B., Piperova, L. S., Erdman, R. A., and Loor, J. J., “Identification of internal control genes for quantitative polymerase chain reaction in mammary tissue of lactating cows receiving lipid supplements.”, J Dairy Sci, vol. 92, no. 5, pp. 2007-19, 2009.

B. J. Thering, Bionaz, M., and Loor, J. J., “Long-chain fatty acid effects on peroxisome proliferator-activated receptor-alpha-regulated genes in Madin-Darby bovine kidney cells: optimization of culture conditions using palmitate.”, J Dairy Sci, vol. 92, no. 5, pp. 2027-37, 2009.

S. Tramontana, Bionaz, M., Sharma, A., Graugnard, D. E., Cutler, E. A., Ajmone-Marsan, P., Hurley, W. L., and Loor, J. J., “Internal controls for quantitative polymerase chain reaction of swine mammary glands during pregnancy and lactation.”, J Dairy Sci, vol. 91, no. 8, pp. 3057-66, 2008.

S. Avraham, Tung, C. - W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Zapata, F., and Ware, D., “The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.”, Nucleic acids research, vol. 36, pp. D449-54, 2008.

P. Jaiswal, Ni, J., Yap, I., Ware, D., Spooner, W., Youens-Clark, K., Ren, L., Liang, C., Zhao, W., Ratnapu, K., Faga, B., Canaran, P., Fogleman, M., Hebbard, C., Avraham, S., Schmidt, S., Casstevens, T. M., Buckler, E. S., Stein, L., and McCouch, S., “Gramene: a bird’s eye view of cereal genomes.”, Nucleic acids research, vol. 34, pp. D717-23, 2006.

Y. Yamazaki and Jaiswal, P., “Biological ontologies in rice databases. An introduction to the activities in Gramene and Oryzabase.”, Plant & cell physiology, vol. 46, pp. 63-8, 2005.

D. Ware, Jaiswal, P., Ni, J., Pan, X., Chang, K., Clark, K., Teytelman, L., Schmidt, S., Zhao, W., Cartinhour, S., McCouch, S., and Stein, L., “Gramene: a resource for comparative grass genomics.”, Nucleic acids research, vol. 30, pp. 103-5, 2002.

T. A. Beardslee, Roy-Chowdhury, S., Jaiswal, P., Buhot, L., Lerbs-Mache, S., Stern, D. B., and Allison, L. A., “A nucleus-encoded maize protein with sigma factor activity accumulates in mitochondria and chloroplasts.”, The Plant journal : for cell and molecular biology, vol. 31, pp. 199-209, 2002.

R. L. Tanguay, Pfeifer, G. P., and Riggs, A. D., “PCR-aided DNaseI footprinting of single copy gene sequences in permeabilized cells.”, Nucleic Acids Res, vol. 18, no. 19, p. 5902, 1990.